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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 786ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 786DNA binding
  • 241DNA accessibility
Target of assay
  • 403transcription factor
  • 378histone
  • 378histone modification
  • 237broad histone mark
  • 141narrow histone mark
  • 91RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 305November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 34August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3376bam
  • 3153bigWig
  • 1802bed narrowPeak
  • 1600tsv
  • 1342fastq
  • 1027bigBed narrowPeak
  • 384tagAlign
  • 307bed broadPeak
  • 273bed bed3+
  • 270bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1021Homo sapiens
Biosample type
  • 561tissue
  • 348cell line
  • 101primary cell
  • 17in vitro differentiated cells
Organ
  • 351liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 1027AMP
Genome assembly (visualization)
  • 984GRCh38
  • 948hg19
Lab
  • 1027AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 9inconsistent control run_type
  • 2inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIe
BIOSAMPLE
ASSAY

1027 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2286
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein1021
skeletal muscle myoblast62
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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