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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 738ChIP-seq
  • 208DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 738DNA binding
  • 240DNA accessibility
Target of assay
  • 378histone
  • 378histone modification
  • 355transcription factor
  • 234broad histone mark
  • 144narrow histone mark
  • 87RNA binding protein
  • 81recombinant protein
  • 29chromatin remodeller
  • 4other context
  • 4other post-translational modification
Date released
  • 261November, 2017
  • 210June, 2019
  • 97May, 2019
  • 71November, 2018
  • 70October, 2019
  • 64April, 2019
  • 48December, 2017
  • 45October, 2018
  • 33August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3255bam
  • 3056bigWig
  • 1723bed narrowPeak
  • 1591tsv
  • 1216fastq
  • 978bigBed narrowPeak
  • 382tagAlign
  • 270bed bed3+
  • 269bed broadPeak
  • 232bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 972Homo sapiens
Biosample type
  • 559tissue
  • 302cell line
  • 100primary cell
  • 17in vitro differentiated cells
Organ
  • 303liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 978AMP
Genome assembly (visualization)
  • 943GRCh38
  • 899hg19
Lab
  • 978AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina Genome Analyzer IIx
BIOSAMPLE
ASSAY

978 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver362
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2240
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle myoblast61
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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