Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 575ChIP-seq
  • 205DNase-seq
  • 13ATAC-seq
  • 5FAIRE-seq
Assay category
  • 575DNA binding
  • 223DNA accessibility
Target of assay
  • 370histone
  • 370histone modification
  • 226broad histone mark
  • 202transcription factor
  • 144narrow histone mark
  • 69RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 210June, 2019
  • 186November, 2017
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 42October, 2018
  • 28November, 2018
  • 27December, 2018
  • 23August, 2017
  • 23December, 2017
  • 17January, 2019
  • 5September, 2017
  • 3October, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 2832bam
  • 2687bigWig
  • 1534bed narrowPeak
  • 1437tsv
  • 798bigBed narrowPeak
  • 796fastq
  • 387tagAlign
  • 305bed broadPeak
  • 275bigBed broadPeak
  • 259bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 797Homo sapiens
Biosample type
  • 503tissue
  • 186cell line
  • 93primary cell
  • 16in vitro differentiated cells
Organ
  • 165liver
  • 123brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 65pancreas
  • 62epithelium
  • 47musculature of body
  • 42blood
  • 42bodily fluid
  • 26nerve
  • 25artery
  • 24connective tissue
  • 18ureter
  • 13vein
  • 10spleen
  • 7adipose tissue
  • 6eye
Project
  • 798AMP
Genome assembly (visualization)
  • 755GRCh38
  • 722hg19
Lab
  • 798AMP-T2D consortium
Audit category:
  • 24inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 15missing controlled_by
Audit category:
  • 20inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

798 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle283
body of pancreas254
tibial nerve242
heart718
cell line
HepG2136
GM1287842
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast131
endothelial cell of umbilical vein1021
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego