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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 715ChIP-seq
  • 207DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 715DNA binding
  • 239DNA accessibility
Target of assay
  • 362transcription factor
  • 349histone
  • 349histone modification
  • 217broad histone mark
  • 132narrow histone mark
  • 81recombinant protein
  • 59RNA binding protein
  • 14chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 294November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 53November, 2018
  • 41August, 2017
  • 31December, 2017
  • 28December, 2018
  • 28October, 2018
  • 14September, 2018
  • 10January, 2019
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3214bam
  • 3009bigWig
  • 1706bed narrowPeak
  • 1566tsv
  • 1171fastq
  • 954bigBed narrowPeak
  • 398tagAlign
  • 319bed broadPeak
  • 283bigBed broadPeak
  • 256bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 948Homo sapiens
Biosample type
  • 530tissue
  • 312cell line
  • 109primary cell
  • 3in vitro differentiated cells
Organ
  • 303liver
  • 126brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 74pancreas
  • 62epithelium
  • 47musculature of body
  • 45blood
  • 45bodily fluid
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13vein
  • 10adipose tissue
  • 7spleen
  • 6eye
Project
  • 954AMP
Genome assembly (visualization)
  • 912GRCh38
  • 876hg19
Lab
  • 954AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 19inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.platform.term_name!
  • Illumina HiSeq 2500
BIOSAMPLE
ASSAY

954 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver371
kidney18131
heart left ventricle283
tibial nerve242
heart718
cell line
HepG2259
GM1287845
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
adipocyte12
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