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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 742ChIP-seq
  • 203DNase-seq
  • 25ATAC-seq
  • 5FAIRE-seq
Assay category
  • 742DNA binding
  • 233DNA accessibility
Target of assay
  • 391histone
  • 391histone modification
  • 349transcription factor
  • 242broad histone mark
  • 149narrow histone mark
  • 81RNA binding protein
  • 81recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 303November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 60November, 2018
  • 48December, 2017
  • 40August, 2017
  • 35October, 2018
  • 15January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5December, 2018
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3279bam
  • 3098bigWig
  • 1729bed narrowPeak
  • 1599tsv
  • 1206fastq
  • 975bigBed narrowPeak
  • 398tagAlign
  • 316bed broadPeak
  • 279bigBed broadPeak
  • 267bed bed3+
  • 155txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 969Homo sapiens
Biosample type
  • 538tissue
  • 311cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 343liver
  • 127brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 82pancreas
  • 79blood vessel
  • 76epithelium
  • 47musculature of body
  • 26nerve
  • 25artery
  • 23connective tissue
  • 20blood
  • 20bodily fluid
  • 18ureter
  • 13vein
  • 9spleen
  • 6eye
  • 5adipose tissue
Project
  • 975AMP
Genome assembly (visualization)
  • 931GRCh38
  • 896hg19
Lab
  • 975AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.platform.term_name!
  • Illumina HiSeq 4000
BIOSAMPLE
ASSAY

975 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver381
kidney18131
heart left ventricle283
tibial nerve242
heart718
cell line
HepG2283
GM1287820
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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