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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 226ChIP-seq
  • 14ATAC-seq
  • 4DNase-seq
Assay category
  • 226DNA binding
  • 18DNA accessibility
Target of assay
  • 203transcription factor
  • 81recombinant protein
  • 24RNA binding protein
  • 21histone
  • 21histone modification
  • 16broad histone mark
  • 9chromatin remodeller
  • 5narrow histone mark
  • 3other context
  • 3other post-translational modification
Date released
  • 126November, 2017
  • 45November, 2018
  • 27December, 2017
  • 19August, 2017
  • 14September, 2018
  • 4January, 2019
  • 3December, 2018
  • 3October, 2017
  • 3October, 2018
Available data
  • 562fastq
  • 560bam
  • 482bigWig
  • 283bed narrowPeak
  • 244bigBed narrowPeak
  • 163tsv
  • 17bed broadPeak
  • 14bed bed3+
  • 11tagAlign
  • 10bigBed broadPeak
Organism
  • 239Homo sapiens
Biosample type
  • 169cell line
  • 58tissue
  • 16primary cell
  • 1in vitro differentiated cells
Organ
  • 193liver
  • 26pancreas
  • 14epithelium
  • 12blood
  • 12bodily fluid
  • 4brain
  • 4connective tissue
  • 3adipose tissue
  • 3spleen
Project
  • 244AMP
Genome assembly (visualization)
  • 243GRCh38
  • 241hg19
Lab
  • 244AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 11inconsistent control read length
  • 2inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

244 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2157
GM1287812
tissue
liver351
pancreas11
brain31
spleen3
subcutaneous adipose tissue2
primary cell
pancreatic beta cell4
pancreatic ductal cell4
pancreatic acinar cell3
pancreatic alpha cell3
skeletal muscle myoblast11
in vitro differentiated cells
adipocyte1
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