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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
14
ATAC-seq
4
DNase-seq
Assay category
226
DNA binding
18
DNA accessibility
Target of assay
203
transcription factor
81
recombinant protein
24
RNA binding protein
21
histone
21
histone modification
16
broad histone mark
9
chromatin remodeller
5
narrow histone mark
3
other context
3
other post-translational modification
Date released
126
November, 2017
45
November, 2018
27
December, 2017
19
August, 2017
14
September, 2018
4
January, 2019
3
December, 2018
3
October, 2017
3
October, 2018
Available data
562
fastq
560
bam
482
bigWig
283
bed narrowPeak
244
bigBed narrowPeak
163
tsv
17
bed broadPeak
14
bed bed3+
11
tagAlign
10
bigBed broadPeak
Organism
239
Homo sapiens
Biosample type
169
cell line
58
tissue
16
primary cell
1
in vitro differentiated cells
Organ
193
liver
26
pancreas
14
epithelium
12
blood
12
bodily fluid
4
brain
4
connective tissue
3
adipose tissue
3
spleen
Project
244
AMP
Genome assembly (visualization)
243
GRCh38
241
hg19
Lab
244
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
11
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
244 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
157
GM12878
12
tissue
liver
35
1
pancreas
11
brain
3
1
spleen
3
subcutaneous adipose tissue
2
+ See 2 more…
primary cell
pancreatic beta cell
4
pancreatic ductal cell
4
pancreatic acinar cell
3
pancreatic alpha cell
3
skeletal muscle myoblast
1
1
in vitro differentiated cells
adipocyte
1
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