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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 86ChIP-seq
  • 2DNase-seq
Assay category
  • 86DNA binding
  • 2DNA accessibility
Target of assay
  • 43transcription factor
  • 42histone
  • 42histone modification
  • 34RNA binding protein
  • 25broad histone mark
  • 20chromatin remodeller
  • 17narrow histone mark
Date released
  • 20November, 2018
  • 19December, 2017
  • 18November, 2017
  • 17October, 2018
  • 11January, 2019
  • 2December, 2018
  • 1August, 2017
Available data
  • 187fastq
  • 178bam
  • 160bigWig
  • 111bed narrowPeak
  • 88bigBed narrowPeak
  • 34tsv
  • 17bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 3bed broadPeak
  • 2bigBed broadPeak
  • 2csv
  • 1zippedFastqFolder
Organism
  • 88Homo sapiens
Biosample type
  • 43cell line
  • 31tissue
  • 14in vitro differentiated cells
Organ
  • 55liver
  • 17pancreas
  • 14epithelium
  • 9blood
  • 9bodily fluid
  • 6spleen
  • 1brain
Project
  • 88AMP
Genome assembly (visualization)
  • 87hg19
  • 86GRCh38
Lab
  • 88AMP-T2D consortium
Audit category:
  • 1inconsistent control
Audit category:
  • 7missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

88 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG234
GM128789
tissue
body of pancreas17
spleen6
right lobe of liver5
liver11
brain1
in vitro differentiated cells
hepatocyte14
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