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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 701ChIP-seq
  • 209DNase-seq
  • 25ATAC-seq
  • 5FAIRE-seq
Assay category
  • 701DNA binding
  • 239DNA accessibility
Target of assay
  • 391histone
  • 391histone modification
  • 308transcription factor
  • 242broad histone mark
  • 149narrow histone mark
  • 81recombinant protein
  • 75RNA binding protein
  • 31chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 277November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 59November, 2018
  • 48December, 2017
  • 40August, 2017
  • 32October, 2018
  • 14September, 2018
  • 13January, 2019
  • 6October, 2017
  • 5September, 2017
  • 2December, 2018
  • 2July, 2019
  • 1November, 2020
Available data
  • 3183bam
  • 3010bigWig
  • 1691bed narrowPeak
  • 1554tsv
  • 1125fastq
  • 940bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 272bed bed3+
  • 155txt
  • 151zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 934Homo sapiens
Biosample type
  • 541tissue
  • 273cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 316liver
  • 127brain
  • 104kidney
  • 94heart
  • 84limb
  • 83pancreas
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 47musculature of body
  • 26nerve
  • 25artery
  • 22connective tissue
  • 18ureter
  • 13vein
  • 11blood
  • 11bodily fluid
  • 10spleen
  • 6eye
  • 4adipose tissue
Project
  • 940AMP
Genome assembly (visualization)
  • 896GRCh38
  • 861hg19
Lab
  • 940AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 100
BIOSAMPLE
ASSAY

940 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
tibial nerve242
heart718
cell line
HepG2254
GM1287811
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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