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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 664ChIP-seq
  • 198DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 664DNA binding
  • 230DNA accessibility
Target of assay
  • 347histone
  • 347histone modification
  • 312transcription factor
  • 219broad histone mark
  • 128narrow histone mark
  • 81recombinant protein
  • 72RNA binding protein
  • 17chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 214November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 57November, 2018
  • 48December, 2017
  • 45October, 2018
  • 30December, 2018
  • 21January, 2019
  • 16August, 2017
  • 14September, 2018
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3134bam
  • 2954bigWig
  • 1617bed narrowPeak
  • 1600tsv
  • 1094fastq
  • 894bigBed narrowPeak
  • 359tagAlign
  • 236bed bed3+
  • 229bed broadPeak
  • 201bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 894Homo sapiens
Biosample type
  • 534tissue
  • 256cell line
  • 88primary cell
  • 16in vitro differentiated cells
Organ
  • 253liver
  • 113brain
  • 104kidney
  • 94heart
  • 84limb
  • 81pancreas
  • 79vasculature
  • 77blood vessel
  • 72epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 26nerve
  • 25artery
  • 25connective tissue
  • 18ureter
  • 13vein
  • 12spleen
  • 8adipose tissue
  • 6eye
Project
  • 894AMP
Genome assembly (visualization)
  • 868GRCh38
  • 815hg19
Lab
  • 894AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 4missing controlled_by
Audit category:
  • 8inconsistent control read length
files.read_length!
  • 36
BIOSAMPLE
ASSAY

894 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver35
kidney18131
heart left ventricle283
body of pancreas262
tibial nerve242
cell line
HepG2194
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte2
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