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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 734ChIP-seq
  • 209DNase-seq
  • 19ATAC-seq
  • 4FAIRE-seq
Assay category
  • 734DNA binding
  • 232DNA accessibility
Target of assay
  • 383histone
  • 383histone modification
  • 346transcription factor
  • 235broad histone mark
  • 148narrow histone mark
  • 92RNA binding protein
  • 69recombinant protein
  • 31chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 286November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 68November, 2018
  • 64April, 2019
  • 45October, 2018
  • 31August, 2017
  • 30December, 2018
  • 23December, 2017
  • 19January, 2019
  • 14September, 2018
  • 6October, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3248bam
  • 3059bigWig
  • 1725bed narrowPeak
  • 1595tsv
  • 1192fastq
  • 966bigBed narrowPeak
  • 398tagAlign
  • 317bed broadPeak
  • 281bigBed broadPeak
  • 262bed bed3+
  • 161txt
  • 113zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 960Homo sapiens
Biosample type
  • 521tissue
  • 327cell line
  • 101primary cell
  • 17in vitro differentiated cells
Organ
  • 297liver
  • 127brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 78pancreas
  • 68epithelium
  • 52blood
  • 52bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 966AMP
Genome assembly (visualization)
  • 923GRCh38
  • 887hg19
Lab
  • 966AMP-T2D consortium
Audit category:
  • 24inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 15missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
files.read_length!
  • 50
BIOSAMPLE
ASSAY

966 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
heart718
cell line
HepG2267
GM1287852
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte12
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