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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 661ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 661DNA binding
  • 241DNA accessibility
Target of assay
  • 349histone
  • 349histone modification
  • 307transcription factor
  • 217broad histone mark
  • 132narrow histone mark
  • 85RNA binding protein
  • 23chromatin remodeller
  • 12recombinant protein
  • 2other context
  • 2other post-translational modification
Date released
  • 243November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 52November, 2018
  • 41August, 2017
  • 31December, 2017
  • 28December, 2018
  • 28October, 2018
  • 14September, 2018
  • 10January, 2019
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3199bam
  • 2989bigWig
  • 1647bed narrowPeak
  • 1600tsv
  • 1155fastq
  • 902bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 152zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 896Homo sapiens
Biosample type
  • 530tissue
  • 261cell line
  • 108primary cell
  • 3in vitro differentiated cells
Organ
  • 254liver
  • 127brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 74pancreas
  • 62epithelium
  • 47musculature of body
  • 45blood
  • 45bodily fluid
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13vein
  • 10adipose tissue
  • 6eye
  • 4spleen
Project
  • 902AMP
Genome assembly (visualization)
  • 858GRCh38
  • 826hg19
Lab
  • 902AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 14missing controlled_by
Audit category:
  • 27inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
files.read_length!
  • 76
BIOSAMPLE
ASSAY

902 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
tibial nerve242
heart718
cell line
HepG2208
GM1287845
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast132
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
adipocyte12
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