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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
11
DNase-seq
Assay category
137
DNA binding
11
DNA accessibility
Target of assay
93
transcription factor
44
histone
44
histone modification
23
broad histone mark
21
RNA binding protein
21
narrow histone mark
17
chromatin remodeller
2
other context
2
other post-translational modification
Date released
98
November, 2017
26
August, 2017
16
November, 2018
6
October, 2017
2
December, 2017
Available data
264
fastq
258
bam
215
bigWig
200
bed narrowPeak
148
bigBed narrowPeak
93
bed broadPeak
84
bigBed broadPeak
39
tagAlign
37
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
Organism
142
Homo sapiens
Biosample type
99
cell line
27
tissue
21
primary cell
1
in vitro differentiated cells
Organ
105
liver
14
brain
10
pancreas
4
epithelium
4
vasculature
3
connective tissue
2
adipose tissue
2
blood vessel
1
spleen
Project
148
AMP
Genome assembly (visualization)
148
hg19
130
GRCh38
Lab
148
AMP-T2D consortium
Audit category:
11
missing controlled_by
Audit category:
23
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
DNase-seq
cell line
HepG2
99
tissue
brain
6
2
pancreas
8
liver
3
2
body of pancreas
2
adipose tissue
1
+ See 3 more…
primary cell
skeletal muscle myoblast
14
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
in vitro differentiated cells
adipocyte
1
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