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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 137ChIP-seq
  • 11DNase-seq
Assay category
  • 137DNA binding
  • 11DNA accessibility
Target of assay
  • 93transcription factor
  • 44histone
  • 44histone modification
  • 23broad histone mark
  • 21RNA binding protein
  • 21narrow histone mark
  • 17chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 98November, 2017
  • 26August, 2017
  • 16November, 2018
  • 6October, 2017
  • 2December, 2017
Available data
  • 264fastq
  • 258bam
  • 215bigWig
  • 200bed narrowPeak
  • 148bigBed narrowPeak
  • 93bed broadPeak
  • 84bigBed broadPeak
  • 39tagAlign
  • 37bed bed3+
  • 4bed bedMethyl
  • 4bigBed bedMethyl
Organism
  • 142Homo sapiens
Biosample type
  • 99cell line
  • 27tissue
  • 21primary cell
  • 1in vitro differentiated cells
Organ
  • 105liver
  • 14brain
  • 10pancreas
  • 4epithelium
  • 4vasculature
  • 3connective tissue
  • 2adipose tissue
  • 2blood vessel
  • 1spleen
Project
  • 148AMP
Genome assembly (visualization)
  • 148hg19
  • 130GRCh38
Lab
  • 148AMP-T2D consortium
Audit category:
  • 11missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
BIOSAMPLE
ASSAY

148 results

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Clear Filters
ChIP-seq
DNase-seq
cell line
HepG299
tissue
brain62
pancreas8
liver32
body of pancreas2
adipose tissue1
primary cell
skeletal muscle myoblast141
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
in vitro differentiated cells
adipocyte1
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