Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 67ChIP-seq
  • 8ATAC-seq
  • 1FAIRE-seq
Assay category
  • 67DNA binding
  • 9DNA accessibility
Target of assay
  • 59transcription factor
  • 12recombinant protein
  • 8histone
  • 8histone modification
  • 7broad histone mark
  • 3chromatin remodeller
  • 1RNA binding protein
  • 1narrow histone mark
Date released
  • 27December, 2017
  • 26November, 2017
  • 11August, 2017
  • 5November, 2018
  • 5September, 2017
  • 2January, 2019
Available data
  • 166fastq
  • 144bam
  • 110bigWig
  • 92bed narrowPeak
  • 76bigBed narrowPeak
  • 40zippedFastqFolder
  • 11bed bed3+
  • 5bed broadPeak
  • 5tsv
  • 4bigBed broadPeak
Organism
  • 76Homo sapiens
Biosample type
  • 40tissue
  • 28cell line
  • 8primary cell
Organ
  • 61liver
  • 13pancreas
  • 8epithelium
  • 2blood
  • 2bodily fluid
Project
  • 76AMP
Genome assembly (visualization)
  • 76hg19
  • 75GRCh38
Lab
  • 76AMP-T2D consortium
Audit category:
  • 27inconsistent control
Audit category:
  • 6inconsistent control read length
BIOSAMPLE
ASSAY

76 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
liver35
pancreas41
cell line
HepG226
GM128782
primary cell
pancreatic alpha cell3
pancreatic beta cell3
pancreatic acinar cell2
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego