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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 688ChIP-seq
  • 199DNase-seq
  • 5FAIRE-seq
  • 3ATAC-seq
Assay category
  • 688DNA binding
  • 207DNA accessibility
Target of assay
  • 389histone
  • 389histone modification
  • 297transcription factor
  • 242broad histone mark
  • 147narrow histone mark
  • 81recombinant protein
  • 72RNA binding protein
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 272November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 48December, 2017
  • 44November, 2018
  • 34August, 2017
  • 32October, 2018
  • 13January, 2019
  • 6October, 2017
  • 2December, 2018
  • 2July, 2019
  • 1November, 2020
Available data
  • 3019bam
  • 2851bigWig
  • 1637bed narrowPeak
  • 1454tsv
  • 903fastq
  • 895bigBed narrowPeak
  • 398tagAlign
  • 310bed broadPeak
  • 275bigBed broadPeak
  • 265bed bed3+
  • 155txt
  • 64xls
  • 31bed bedMethyl
  • 31bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 18zippedFastqFolder
  • 12bed bed3
  • 7bed bedgraph
  • 6csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 889Homo sapiens
Biosample type
  • 530tissue
  • 264cell line
  • 85primary cell
  • 16in vitro differentiated cells
Organ
  • 304liver
  • 126brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 59pancreas
  • 54epithelium
  • 47musculature of body
  • 26nerve
  • 25artery
  • 20connective tissue
  • 18ureter
  • 13vein
  • 11blood
  • 11bodily fluid
  • 6eye
  • 6spleen
  • 3adipose tissue
Project
  • 895AMP
Genome assembly (visualization)
  • 854GRCh38
  • 816hg19
Lab
  • 895AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 8missing controlled_by
Audit category:
  • 23inconsistent control read length
  • 2inconsistent assembly
files.run_type!
  • paired-ended
BIOSAMPLE
ASSAY

895 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver38
kidney18131
heart left ventricle283
tibial nerve242
heart718
cell line
HepG2245
GM1287811
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast131
endothelial cell of umbilical vein1021
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte2
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