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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 424ChIP-seq
  • 206DNase-seq
  • 27ATAC-seq
  • 3FAIRE-seq
Assay category
  • 424DNA binding
  • 236DNA accessibility
Target of assay
  • 299histone
  • 299histone modification
  • 187broad histone mark
  • 122transcription factor
  • 112narrow histone mark
  • 33RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 210June, 2019
  • 97May, 2019
  • 96November, 2017
  • 70October, 2019
  • 64April, 2019
  • 29November, 2018
  • 28December, 2018
  • 27October, 2018
  • 14September, 2018
  • 8January, 2019
  • 7August, 2017
  • 5September, 2017
  • 2December, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 2590bam
  • 2477bigWig
  • 1502tsv
  • 1294bed narrowPeak
  • 660bigBed narrowPeak
  • 450fastq
  • 359tagAlign
  • 234bed broadPeak
  • 222bed bed3+
  • 206bigBed broadPeak
  • 161txt
  • 134zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 660Homo sapiens
Biosample type
  • 471tissue
  • 98cell line
  • 88primary cell
  • 3in vitro differentiated cells
Organ
  • 114brain
  • 104kidney
  • 94heart
  • 84limb
  • 79vasculature
  • 77blood vessel
  • 58epithelium
  • 58pancreas
  • 55liver
  • 47musculature of body
  • 43blood
  • 43bodily fluid
  • 27connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13vein
  • 9adipose tissue
  • 7spleen
  • 6eye
Project
  • 660AMP
Genome assembly (visualization)
  • 650GRCh38
  • 585hg19
Lab
  • 660AMP-T2D consortium
Audit category:
  • 24inconsistent ontology term
Audit category:
  • 6missing controlled_by
Audit category:
  • 8inconsistent control run_type
  • 7inconsistent control read length
files.run_type!
  • single-ended
BIOSAMPLE
ASSAY

660 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle283
tibial nerve242
heart718
tibial artery182
cell line
HepG247
GM1287843
Panc161
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
adipocyte12
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