Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 113ChIP-seq
  • 24ATAC-seq
  • 10DNase-seq
Assay category
  • 113DNA binding
  • 34DNA accessibility
Target of assay
  • 108transcription factor
  • 21RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
  • 2histone
  • 2histone modification
  • 2narrow histone mark
Date released
  • 40November, 2017
  • 29November, 2018
  • 28December, 2018
  • 14September, 2018
  • 13October, 2018
  • 8August, 2017
  • 8January, 2019
  • 5September, 2017
  • 2December, 2017
Available data
  • 455fastq
  • 373bam
  • 318bigWig
  • 180bed narrowPeak
  • 147bigBed narrowPeak
  • 146tsv
  • 135zippedFastqFolder
  • 12bed broadPeak
  • 10bigBed broadPeak
  • 8bed bed3+
  • 6txt
  • 5bed bedMethyl
  • 5bigBed bedMethyl
  • 2csv
  • 1bedpe bed3+
Organism
  • 147Homo sapiens
Biosample type
  • 91cell line
  • 31tissue
  • 24primary cell
  • 1in vitro differentiated cells
Organ
  • 54liver
  • 43blood
  • 43bodily fluid
  • 32pancreas
  • 22epithelium
  • 8connective tissue
  • 7adipose tissue
  • 7spleen
  • 1brain
Project
  • 147AMP
Genome assembly (visualization)
  • 147hg19
  • 144GRCh38
Lab
  • 147AMP-T2D consortium
Audit category:
  • 7missing controlled_by
Audit category:
  • 9inconsistent control run_type
  • 8inconsistent control read length
  • 1inconsistent assembly
BIOSAMPLE
ASSAY

147 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG248
GM1287843
tissue
body of pancreas82
spleen61
omental fat pad31
right lobe of liver211
subcutaneous adipose tissue21
primary cell
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
pancreatic ductal cell4
skeletal muscle myoblast11
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego