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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
377
ChIP-seq
3
DNase-seq
2
FAIRE-seq
Assay category
377
DNA binding
5
DNA accessibility
Target of assay
283
transcription factor
92
histone
92
histone modification
81
recombinant protein
60
RNA binding protein
55
broad histone mark
37
narrow histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
216
November, 2017
48
December, 2017
44
November, 2018
35
August, 2017
18
October, 2018
13
January, 2019
6
October, 2017
2
December, 2018
Available data
908
fastq
802
bam
692
bigWig
523
bed narrowPeak
382
bigBed narrowPeak
98
tsv
88
bed broadPeak
79
bigBed broadPeak
51
bed bed3+
39
tagAlign
19
zippedFastqFolder
8
bed bedMethyl
8
bigBed bedMethyl
3
tar
Organism
376
Homo sapiens
Biosample type
257
cell line
90
tissue
21
primary cell
14
in vitro differentiated cells
Organ
303
liver
33
pancreas
18
epithelium
13
brain
11
blood
11
bodily fluid
6
spleen
4
vasculature
2
blood vessel
1
adipose tissue
1
connective tissue
Project
382
AMP
Genome assembly (visualization)
378
hg19
348
GRCh38
Lab
382
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
9
missing controlled_by
Audit category:
24
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
BIOSAMPLE
ASSAY
382 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
246
GM12878
11
tissue
liver
38
body of pancreas
17
pancreas
13
1
brain
6
1
spleen
6
+ See 3 more…
primary cell
skeletal muscle myoblast
14
1
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
in vitro differentiated cells
hepatocyte
14
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