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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 377ChIP-seq
  • 3DNase-seq
  • 2FAIRE-seq
Assay category
  • 377DNA binding
  • 5DNA accessibility
Target of assay
  • 283transcription factor
  • 92histone
  • 92histone modification
  • 81recombinant protein
  • 60RNA binding protein
  • 55broad histone mark
  • 37narrow histone mark
  • 23chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 216November, 2017
  • 48December, 2017
  • 44November, 2018
  • 35August, 2017
  • 18October, 2018
  • 13January, 2019
  • 6October, 2017
  • 2December, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 376Homo sapiens
Biosample type
  • 257cell line
  • 90tissue
  • 21primary cell
  • 14in vitro differentiated cells
Organ
  • 303liver
  • 33pancreas
  • 18epithelium
  • 13brain
  • 11blood
  • 11bodily fluid
  • 6spleen
  • 4vasculature
  • 2blood vessel
  • 1adipose tissue
  • 1connective tissue
Project
  • 382AMP
Genome assembly (visualization)
  • 378hg19
  • 348GRCh38
Lab
  • 382AMP-T2D consortium
Audit category:
  • 28inconsistent control
Audit category:
  • 9missing controlled_by
Audit category:
  • 24inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

382 results

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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2246
GM1287811
tissue
liver38
body of pancreas17
pancreas131
brain61
spleen6
primary cell
skeletal muscle myoblast141
astrocyte of the cerebellum2
brain microvascular endothelial cell2
choroid plexus epithelial cell2
in vitro differentiated cells
hepatocyte14
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