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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
329
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
chromatin remodeller
21
broad histone mark
14
narrow histone mark
2
other context
2
other post-translational modification
Date released
234
November, 2017
47
December, 2017
46
November, 2018
6
August, 2017
2
June, 2019
Available data
658
bam
579
bigWig
442
fastq
398
bed narrowPeak
335
bigBed narrowPeak
174
tsv
86
tagAlign
59
bed broadPeak
59
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
335
Homo sapiens
Biosample type
273
cell line
47
tissue
13
in vitro differentiated cells
2
primary cell
Organ
335
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
75
epithelium
47
musculature of body
44
blood
44
bodily fluid
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
335
AMP
Genome assembly (visualization)
331
hg19
305
GRCh38
Lab
335
AMP-T2D consortium
Audit category:
25
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
14
inconsistent control read length
lab.title!
Karen Mohlke, UNC
organ_slims!
ovary
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
335 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
273
tissue
liver
36
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
13
primary cell
hepatic stellate cell
1
hepatocyte
1
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