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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ChIP-seq
8
DNase-seq
3
ATAC-seq
1
FAIRE-seq
Assay category
119
DNA binding
12
DNA accessibility
Target of assay
117
histone
117
histone modification
75
broad histone mark
42
narrow histone mark
5
transcription factor
RNA binding protein
Date released
277
November, 2017
206
June, 2019
92
May, 2019
70
October, 2019
61
April, 2019
52
November, 2018
46
December, 2017
40
August, 2017
34
October, 2018
28
December, 2018
15
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
325
bam
269
bigWig
251
bed narrowPeak
131
bigBed narrowPeak
49
tagAlign
16
tsv
9
bed broadPeak
9
bigBed broadPeak
8
bed bed3+
4
hic
3
bedpe bed3+
1
hdf5
1
tagAlign bed3+
1
tar
Organism
131
Homo sapiens
Biosample type
108
tissue
13
primary cell
8
cell line
2
in vitro differentiated cells
Organ
46
limb
43
heart
33
blood vessel
33
vasculature
26
nerve
20
artery
19
kidney
14
epithelium
13
vein
7
pancreas
3
connective tissue
1
adipose tissue
Project
131
AMP
Genome assembly (visualization)
131
hg19
127
GRCh38
Lab
131
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
131 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
tibial nerve
24
2
heart left ventricle
25
tibial artery
18
2
kidney
18
heart right ventricle
11
+ See 2 more…
primary cell
endothelial cell of umbilical vein
10
2
1
cell line
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
2
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