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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
686
ChIP-seq
183
DNase-seq
4
FAIRE-seq
1
ATAC-seq
Assay category
686
DNA binding
188
DNA accessibility
Target of assay
387
transcription factor
294
histone
294
histone modification
187
broad histone mark
107
narrow histone mark
81
recombinant protein
77
RNA binding protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
308
November, 2017
177
June, 2019
93
May, 2019
72
November, 2018
April, 2019
53
October, 2019
40
October, 2018
36
August, 2017
36
December, 2017
30
December, 2018
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2274
bam
2104
bigWig
1526
bed narrowPeak
985
fastq
874
bigBed narrowPeak
837
tsv
369
tagAlign
290
bed broadPeak
254
bigBed broadPeak
225
bed bed3+
161
txt
73
zippedFastqFolder
64
xls
27
bed bedMethyl
27
bigBed bedMethyl
17
bedpe bed3+
17
hic
8
csv
6
bed bed3
3
bed bedgraph
3
tar
2
hdf5
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
868
Homo sapiens
Biosample type
487
tissue
354
cell line
33
primary cell
Organ
358
liver
127
brain
91
pancreas
86
kidney
84
limb
83
vasculature
79
blood vessel
epithelium
54
blood
54
bodily fluid
48
heart
47
musculature of body
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
874
AMP
Genome assembly (visualization)
834
GRCh38
802
hg19
Lab
874
AMP-T2D consortium
Audit category:
28
inconsistent control
9
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
month_released!
April, 2019
July, 2018
organ_slims!
connective tissue
epithelium
BIOSAMPLE
ASSAY
874 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
body of pancreas
26
4
tibial nerve
24
2
brain
6
14
tibial artery
18
2
+ See 50 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
primary cell
skeletal muscle myoblast
14
2
skeletal muscle satellite cell
7
astrocyte of the cerebellum
2
1
cardiac muscle cell
2
1
skeletal muscle cell
1
1
+ See 2 more…
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