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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 769ChIP-seq
  • 205DNase-seq
  • 22ATAC-seq
  • 4FAIRE-seq
Assay category
  • 769DNA binding
  • 231DNA accessibility
Target of assay
  • 403transcription factor
  • 361histone
  • 361histone modification
  • 224broad histone mark
  • 137narrow histone mark
  • 91RNA binding protein
  • 81recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3110bam
  • 2897bigWig
  • 1675bed narrowPeak
  • 1511tsv
  • 1071fastq
  • 1000bigBed narrowPeak
  • 313tagAlign
  • 281bed broadPeak
  • 270bigBed broadPeak
  • 240bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1000Homo sapiens
Biosample type
  • 539tissue
  • 355cell line
  • 90primary cell
  • 16in vitro differentiated cells
Organ
  • 352liver
  • 127brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 74pancreas
  • 73epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 26nerve
  • 25artery
  • 25connective tissue
  • 18ureter
  • 13spleen
  • 13vein
  • 8adipose tissue
  • 6eye
Project
  • 1000AMP
Genome assembly (visualization)
  • 960GRCh38
  • 921hg19
Lab
  • 1000AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 25inconsistent control read length
  • 8inconsistent control run_type
month_released!
  • August, 2017
BIOSAMPLE
ASSAY

1000 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver332
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
endothelial cell of umbilical vein1021
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
pancreatic beta cell6
in vitro differentiated cells
hepatocyte14
adipocyte2
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