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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
ChIP-seq
Assay category
118
DNA binding
Target of assay
368
transcription factor
309
histone
309
histone modification
191
broad histone mark
118
narrow histone mark
85
RNA binding protein
81
recombinant protein
31
chromatin remodeller
5
other context
5
other post-translational modification
0
control
Date released
27
November, 2017
22
April, 2019
20
May, 2019
12
August, 2017
11
June, 2019
11
October, 2018
11
October, 2019
December, 2017
3
January, 2019
1
October, 2017
Available data
628
bam
423
bigWig
390
bed narrowPeak
240
tagAlign
239
fastq
118
bigBed narrowPeak
28
bed broadPeak
13
bigBed broadPeak
12
bed bed3+
3
tsv
1
tagAlign bed3+
Organism
116
Homo sapiens
Biosample type
88
tissue
20
primary cell
10
cell line
Organ
33
brain
25
vasculature
blood vessel
22
heart
19
pancreas
14
limb
10
epithelium
10
kidney
8
nerve
7
liver
6
artery
6
musculature of body
5
connective tissue
5
vein
2
spleen
1
adipose tissue
1
blood
1
bodily fluid
1
eye
Project
118
AMP
Genome assembly (visualization)
117
GRCh38
102
hg19
Lab
118
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
month_released!
December, 2017
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
118 results
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Clear Filters
ChIP-seq
tissue
heart left ventricle
8
kidney
8
tibial nerve
8
body of pancreas
6
endocrine pancreas
6
+ See 19 more…
primary cell
skeletal muscle myoblast
6
skeletal muscle satellite cell
3
cardiac fibroblast
2
mesenchymal stem cell
2
astrocyte of the cerebellum
1
+ See 6 more…
cell line
HepG2
6
Panc1
3
GM12878
1
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