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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 751ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 751DNA binding
  • 241DNA accessibility
Target of assay
  • 374histone
  • 374histone modification
  • 372transcription factor
  • 232broad histone mark
  • 142narrow histone mark
  • 89RNA binding protein
  • 81recombinant protein
  • 31chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3298bam
  • 3097bigWig
  • 1745bed narrowPeak
  • 1600tsv
  • 1264fastq
  • 992bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 258bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 986Homo sapiens
Biosample type
  • 525tissue
  • 355cell line
  • 109primary cell
  • 3in vitro differentiated cells
Organ
  • 308liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 62epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 992AMP
Genome assembly (visualization)
  • 948GRCh38
  • 913hg19
Lab
  • 992AMP-T2D consortium
Audit category:
  • 24inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • December, 2017
BIOSAMPLE
ASSAY

992 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
heart718
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
adipocyte12
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