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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
257
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
257
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
narrow histone mark
2
other context
2
other post-translational modification
Date released
177
November, 2017
43
December, 2017
36
November, 2018
5
August, 2017
2
June, 2019
Available data
549
bam
489
bigWig
363
fastq
309
bed narrowPeak
263
bigBed narrowPeak
174
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
263
Homo sapiens
Biosample type
206
cell line
46
tissue
9
in vitro differentiated cells
2
primary cell
Organ
263
liver
94
brain
94
kidney
72
heart
72
pancreas
70
limb
61
epithelium
58
vasculature
55
blood vessel
41
musculature of body
26
blood
26
bodily fluid
23
connective tissue
19
artery
18
nerve
18
ureter
9
adipose tissue
8
spleen
8
vein
5
eye
Project
263
AMP
Genome assembly (visualization)
262
hg19
231
GRCh38
Lab
263
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
11
missing controlled_by
Audit category:
19
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2018
target.investigated_as!
narrow histone mark
recombinant protein
BIOSAMPLE
ASSAY
263 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
206
tissue
liver
37
2
right lobe of liver
5
1
1
in vitro differentiated cells
hepatocyte
9
primary cell
hepatic stellate cell
1
hepatocyte
1
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