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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 771ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 771DNA binding
  • 241DNA accessibility
Target of assay
  • 391histone
  • 391histone modification
  • 377transcription factor
  • 242broad histone mark
  • 149narrow histone mark
  • 91RNA binding protein
  • 81recombinant protein
  • 32chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3358bam
  • 3139bigWig
  • 1787bed narrowPeak
  • 1600tsv
  • 1323fastq
  • 1012bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1006Homo sapiens
Biosample type
  • 558tissue
  • 328cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 47musculature of body
  • 28connective tissue
  • 27blood
  • 27bodily fluid
  • 26nerve
  • 25artery
  • 18ureter
  • 13vein
  • 10adipose tissue
  • 10spleen
  • 6eye
Project
  • 1012AMP
Genome assembly (visualization)
  • 968GRCh38
  • 933hg19
Lab
  • 1012AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • December, 2018
BIOSAMPLE
ASSAY

1012 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287827
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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