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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
350
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
350
DNA binding
6
DNA accessibility
Target of assay
314
transcription factor
81
recombinant protein
55
RNA binding protein
35
histone
35
histone modification
23
chromatin remodeller
21
broad histone mark
14
narrow histone mark
other context
2
other post-translational modification
Date released
247
November, 2017
51
November, 2018
50
December, 2017
6
August, 2017
2
June, 2019
Available data
674
bam
615
bigWig
463
fastq
439
bed narrowPeak
356
bigBed narrowPeak
169
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
356
Homo sapiens
Biosample type
291
cell line
49
tissue
14
in vitro differentiated cells
2
primary cell
Organ
356
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
nerve
25
artery
18
ureter
13
vein
10
adipose tissue
10
spleen
6
eye
Project
356
AMP
Genome assembly (visualization)
352
hg19
324
GRCh38
Lab
356
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
month_released!
December, 2019
organ_slims!
nerve
target.investigated_as!
other context
BIOSAMPLE
ASSAY
356 results
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ChIP-seq
DNase-seq
ATAC-seq
cell line
HepG2
291
tissue
liver
38
2
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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