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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
ChIP-seq
22
ATAC-seq
19
DNase-seq
3
FAIRE-seq
Assay category
130
DNA binding
44
DNA accessibility
Target of assay
115
histone
115
histone modification
71
broad histone mark
44
narrow histone mark
15
transcription factor
11
RNA binding protein
Date released
40
May, 2019
40
October, 2018
40
October, 2019
17
August, 2017
14
September, 2018
11
June, 2019
5
September, 2017
4
November, 2017
3
November, 2018
Available data
873
bam
778
bigWig
485
tsv
476
fastq
347
bed narrowPeak
174
bigBed narrowPeak
80
zippedFastqFolder
42
bed bed3+
37
bed broadPeak
25
tagAlign
24
bigBed broadPeak
9
bedpe bed3+
9
hic
8
bed bedMethyl
8
bigBed bedMethyl
6
txt
3
cool
3
hdf5
1
tar
Organism
168
Homo sapiens
Biosample type
124
tissue
43
primary cell
7
cell line
Organ
358
liver
127
brain
104
kidney
94
heart
91
pancreas
84
limb
83
vasculature
79
blood vessel
76
epithelium
47
musculature of body
39
blood
39
bodily fluid
28
connective tissue
26
nerve
25
artery
18
ureter
13
vein
10
adipose tissue
7
spleen
6
eye
Project
174
AMP
Genome assembly (visualization)
171
GRCh38
171
hg19
Lab
174
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
5
inconsistent control read length
1
inconsistent assembly
month_released!
January, 2019
March, 2019
BIOSAMPLE
ASSAY
174 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
body of pancreas
26
4
tibial artery
18
2
pancreas
13
2
1
ascending aorta
13
1
endocrine pancreas
14
+ See 4 more…
primary cell
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
+ See 4 more…
cell line
Panc1
6
1
See all biosamples
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