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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
315
ChIP-seq
Assay category
315
DNA binding
Target of assay
396
transcription factor
306
histone
306
histone modification
193
broad histone mark
113
narrow histone mark
84
RNA binding protein
recombinant protein
34
chromatin remodeller
5
other context
5
other post-translational modification
Date released
168
November, 2017
48
November, 2018
33
December, 2017
28
December, 2018
15
October, 2018
14
January, 2019
5
April, 2019
June, 2019
2
August, 2017
2
May, 2019
Available data
395
bigWig
383
bam
370
fastq
368
bed narrowPeak
315
bigBed narrowPeak
47
bed broadPeak
47
bigBed broadPeak
19
bed bed3+
5
tagAlign
3
tar
Organism
315
Homo sapiens
Biosample type
247
cell line
62
tissue
4
primary cell
2
in vitro differentiated cells
Organ
233
liver
51
blood
51
bodily fluid
10
pancreas
7
heart
6
spleen
5
adipose tissue
5
connective tissue
5
epithelium
vasculature
4
blood vessel
3
brain
1
artery
1
kidney
Project
315
AMP
Genome assembly (visualization)
314
hg19
282
GRCh38
Lab
315
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
14
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
organ_slims!
vasculature
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
315 results
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ChIP-seq
cell line
HepG2
196
GM12878
51
tissue
liver
33
body of pancreas
9
spleen
6
heart left ventricle
5
omental fat pad
3
+ See 4 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
kidney epithelial cell
1
in vitro differentiated cells
hepatocyte
2
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