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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 778ChIP-seq
  • 27ATAC-seq
  • 22DNase-seq
  • 5FAIRE-seq
Assay category
  • 778DNA binding
  • 54DNA accessibility
Target of assay
  • 401transcription factor
  • 372histone
  • 372histone modification
  • 234broad histone mark
  • 138narrow histone mark
  • 89RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3174bam
  • 2959bigWig
  • 1607bed narrowPeak
  • 1600tsv
  • 1358fastq
  • 832bigBed narrowPeak
  • 398tagAlign
  • 161txt
  • 153zippedFastqFolder
  • 135bed broadPeak
  • 98bigBed broadPeak
  • 86bed bed3+
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 826Homo sapiens
Biosample type
  • 398tissue
  • 355cell line
  • 62primary cell
  • 17in vitro differentiated cells
Organ
  • 356liver
  • 97brain
  • 87pancreas
  • 76vasculature
  • 74blood vessel
  • 61heart
  • 58epithelium
  • 54blood
  • 54bodily fluid
  • 52limb
  • 26nerve
  • 24kidney
  • 23artery
  • 13connective tissue
  • 13spleen
  • 13vein
  • 9adipose tissue
  • 6musculature of body
Project
  • 832AMP
Genome assembly (visualization)
  • 788GRCh38
  • 776hg19
Lab
  • 832AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 2inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • June, 2019
BIOSAMPLE
ASSAY

832 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver382
body of pancreas262
heart left ventricle28
tibial nerve242
tibial artery182
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
pancreatic alpha cell6
pancreatic acinar cell5
in vitro differentiated cells
hepatocyte14
adipocyte21
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