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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
5
DNase-seq
1
ATAC-seq
Assay category
103
DNA binding
6
DNA accessibility
Target of assay
81
transcription factor
23
RNA binding protein
22
histone
22
histone modification
15
recombinant protein
14
broad histone mark
8
chromatin remodeller
8
narrow histone mark
Date released
November, 2017
51
November, 2018
50
December, 2017
6
August, 2017
2
June, 2019
Available data
367
bam
354
bigWig
192
bed narrowPeak
176
tsv
150
fastq
109
bigBed narrowPeak
74
tagAlign
13
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
109
Homo sapiens
Biosample type
49
tissue
44
cell line
14
in vitro differentiated cells
2
primary cell
Organ
109
liver
104
kidney
94
heart
91
pancreas
84
limb
79
vasculature
77
blood vessel
72
epithelium
64
brain
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
0
intestine
Project
109
AMP
Genome assembly (visualization)
109
GRCh38
107
hg19
Lab
109
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
4
inconsistent control run_type
month_released!
November, 2017
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
DNase-seq
ATAC-seq
tissue
liver
38
2
right lobe of liver
7
1
1
cell line
HepG2
44
in vitro differentiated cells
hepatocyte
14
primary cell
hepatic stellate cell
1
hepatocyte
1
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