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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 489ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 489DNA binding
  • 241DNA accessibility
Target of assay
  • 318histone
  • 318histone modification
  • 197broad histone mark
  • 169transcription factor
  • 121narrow histone mark
  • 58RNA binding protein
  • 19chromatin remodeller
  • 15recombinant protein
  • 3other context
  • 3other post-translational modification
Date released
  • November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3000bam
  • 2835bigWig
  • 1600tsv
  • 1504bed narrowPeak
  • 1034fastq
  • 730bigBed narrowPeak
  • 320tagAlign
  • 273bed bed3+
  • 252bed broadPeak
  • 221bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1vcf
Organism
  • 724Homo sapiens
Biosample type
  • 504tissue
  • 106cell line
  • 103primary cell
  • 17in vitro differentiated cells
Organ
  • 109liver
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 79vasculature
  • 77blood vessel
  • 72epithelium
  • 64brain
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 730AMP
Genome assembly (visualization)
  • 718GRCh38
  • 705hg19
Lab
  • 730AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 5missing controlled_by
Audit category:
  • 12inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2017
BIOSAMPLE
ASSAY

730 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
GM1287854
HepG244
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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