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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 738ChIP-seq
  • 200DNase-seq
  • 27ATAC-seq
  • 4FAIRE-seq
Assay category
  • 738DNA binding
  • 231DNA accessibility
Target of assay
  • 391histone
  • 391histone modification
  • 342transcription factor
  • 242broad histone mark
  • 149narrow histone mark
  • 72RNA binding protein
  • 66recombinant protein
  • 27chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3305bam
  • 3089bigWig
  • 1744bed narrowPeak
  • 1600tsv
  • 1270fastq
  • 969bigBed narrowPeak
  • 398tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 264bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 29bed bedMethyl
  • 29bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 7csv
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 963Homo sapiens
Biosample type
  • 544tissue
  • 299cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 307liver
  • 125brain
  • 104kidney
  • 94heart
  • 88pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 47musculature of body
  • 42blood
  • 42bodily fluid
  • 27connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13vein
  • 9adipose tissue
  • 9spleen
  • 6eye
Project
  • 969AMP
Genome assembly (visualization)
  • 926GRCh38
  • 892hg19
Lab
  • 969AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 13missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 5inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • November, 2018
BIOSAMPLE
ASSAY

969 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver34
kidney18131
heart left ventricle283
body of pancreas262
tibial nerve242
cell line
HepG2249
GM1287842
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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