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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 756ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 756DNA binding
  • 241DNA accessibility
Target of assay
  • 390transcription factor
  • 361histone
  • 361histone modification
  • 223broad histone mark
  • 138narrow histone mark
  • 82RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3316bam
  • 3122bigWig
  • 1772bed narrowPeak
  • 1598tsv
  • 1298fastq
  • 997bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 273bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 991Homo sapiens
Biosample type
  • 516tissue
  • 355cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 51pancreas
  • 47musculature of body
  • 26nerve
  • 25artery
  • 23connective tissue
  • 18ureter
  • 13spleen
  • 13vein
  • 6eye
  • 5adipose tissue
Project
  • 997AMP
Genome assembly (visualization)
  • 953GRCh38
  • 918hg19
Lab
  • 997AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • October, 2018
BIOSAMPLE
ASSAY

997 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
tibial nerve242
heart718
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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