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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 743ChIP-seq
  • 201DNase-seq
  • 24ATAC-seq
  • 4FAIRE-seq
Assay category
  • 743DNA binding
  • 229DNA accessibility
Target of assay
  • 405transcription factor
  • 333histone
  • 333histone modification
  • 204broad histone mark
  • 129narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3142bam
  • 2962bigWig
  • 1628bed narrowPeak
  • 1584tsv
  • 1358fastq
  • 972bigBed narrowPeak
  • 349tagAlign
  • 313bed broadPeak
  • 276bigBed broadPeak
  • 265bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 20bedpe bed3+
  • 19hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 3tar
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 966Homo sapiens
Biosample type
  • 514tissue
  • 347cell line
  • 96primary cell
  • 15in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 103kidney
  • 94heart
  • 84pancreas
  • 62epithelium
  • 54blood
  • 54bodily fluid
  • 50vasculature
  • 47musculature of body
  • 46blood vessel
  • 38limb
  • 25connective tissue
  • 18ureter
  • 13spleen
  • 9adipose tissue
  • 6eye
  • 5artery
Project
  • 972AMP
Genome assembly (visualization)
  • 932GRCh38
  • 893hg19
Lab
  • 972AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
month_released!
  • October, 2019
BIOSAMPLE
ASSAY

972 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
heart718
cell line
HepG2293
GM1287854
primary cell
skeletal muscle myoblast142
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte1
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