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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
31
DNase-seq
1
FAIRE-seq
Assay category
92
DNA binding
32
DNA accessibility
Target of assay
90
histone
90
histone modification
58
broad histone mark
32
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
61
November, 2017
29
June, 2019
25
May, 2019
6
October, 2017
2
November, 2018
1
July, 2019
Available data
239
bam
217
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
26
tsv
18
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
124
Homo sapiens
Biosample type
116
tissue
8
primary cell
Organ
358
liver
127
brain
104
kidney
94
heart
84
limb
83
vasculature
blood vessel
77
pancreas
62
epithelium
54
blood
54
bodily fluid
47
musculature of body
28
connective tissue
26
nerve
25
artery
18
ureter
13
spleen
13
vein
10
adipose tissue
6
eye
Project
124
AMP
Genome assembly (visualization)
123
GRCh38
62
hg19
Lab
124
AMP-T2D consortium
Audit category:
3
missing controlled_by
month_released!
September, 2018
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
DNase-seq
FAIRE-seq
tissue
brain
6
14
layer of hippocampus
16
caudate nucleus
12
1
temporal lobe
13
angular gyrus
12
+ See 14 more…
primary cell
astrocyte of the cerebellum
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
See all biosamples
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