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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
30
DNA binding
10
DNA accessibility
Target of assay
30
histone
30
histone modification
18
broad histone mark
12
narrow histone mark
RNA binding protein
2
transcription factor
1
chromatin remodeller
Date released
277
November, 2017
206
June, 2019
92
May, 2019
70
October, 2019
61
April, 2019
November, 2018
46
December, 2017
40
August, 2017
34
October, 2018
28
December, 2018
15
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
279
fastq
274
bam
264
bigWig
135
bed narrowPeak
89
tsv
85
tagAlign
40
bigBed narrowPeak
39
bed broadPeak
31
bed bed3+
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
34
Homo sapiens
Biosample type
22
tissue
17
primary cell
1
in vitro differentiated cells
Organ
17
pancreas
6
liver
3
connective tissue
3
epithelium
2
adipose tissue
Project
40
AMP
Genome assembly (visualization)
40
hg19
37
GRCh38
Lab
40
AMP-T2D consortium
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
November, 2018
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas
12
liver
5
islet of Langerhans
1
1
adipose tissue
1
right lobe of liver
1
+ See 1 more…
primary cell
skeletal muscle myoblast
12
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
adipocyte
1
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