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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
35
DNA binding
10
DNA accessibility
Target of assay
histone
47
histone modification
35
transcription factor
broad histone mark
19
narrow histone mark
6
RNA binding protein
4
chromatin remodeller
Date released
239
November, 2017
191
June, 2019
73
November, 2018
33
December, 2017
30
December, 2018
15
October, 2018
14
January, 2019
14
September, 2018
12
August, 2017
12
October, 2019
5
April, 2019
5
May, 2019
5
September, 2017
2
July, 2019
1
November, 2020
Available data
248
fastq
243
bam
192
bigWig
89
tsv
77
bed narrowPeak
45
bigBed narrowPeak
26
bed bed3+
11
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
4
bed broadPeak
4
bigBed broadPeak
Organism
45
Homo sapiens
Biosample type
35
tissue
7
primary cell
3
in vitro differentiated cells
Organ
34
liver
5
epithelium
5
pancreas
2
connective tissue
1
adipose tissue
Project
45
AMP
Genome assembly (visualization)
45
hg19
41
GRCh38
Lab
45
AMP-T2D consortium
Audit category:
27
inconsistent control
target.investigated_as!
broad histone mark
histone
BIOSAMPLE
ASSAY
45 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver
29
right lobe of liver
2
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
primary cell
skeletal muscle myoblast
2
2
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
in vitro differentiated cells
hepatocyte
2
adipocyte
1
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