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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
DNase-seq
55
ChIP-seq
5
ATAC-seq
1
FAIRE-seq
Assay category
197
DNA accessibility
55
DNA binding
Target of assay
49
histone
49
histone modification
26
broad histone mark
23
narrow histone mark
6
RNA binding protein
6
transcription factor
1
chromatin remodeller
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
1
November, 2020
Available data
500
bam
482
bigWig
352
bed narrowPeak
287
fastq
252
bigBed narrowPeak
228
bed broadPeak
220
bed bed3+
202
bigBed broadPeak
89
tsv
85
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
Organism
246
Homo sapiens
Biosample type
185
tissue
66
primary cell
1
in vitro differentiated cells
Organ
80
kidney
41
musculature of body
33
heart
32
limb
30
brain
21
epithelium
21
pancreas
18
connective tissue
18
ureter
8
liver
7
vasculature
6
eye
5
blood vessel
3
adipose tissue
2
artery
Project
252
AMP
Genome assembly (visualization)
248
GRCh38
229
hg19
Lab
252
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
6
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
month_released!
April, 2018
BIOSAMPLE
ASSAY
252 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
FAIRE-seq
tissue
heart
18
muscle of arm
17
pancreas
2
12
kidney
13
muscle of leg
13
+ See 39 more…
primary cell
skeletal muscle myoblast
2
14
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
cardiac muscle cell
1
2
+ See 21 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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