Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 32ChIP-seq
  • 5ATAC-seq
  • 4DNase-seq
  • 1FAIRE-seq
Assay category
  • 32DNA binding
  • 10DNA accessibility
Target of assay
  • 30histone
  • 30histone modification
  • 18broad histone mark
  • 12narrow histone mark
  • 2RNA binding protein
  • 2transcription factor
  • 1chromatin remodeller
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 287fastq
  • 282bam
  • 272bigWig
  • 142bed narrowPeak
  • 89tsv
  • 85tagAlign
  • 42bigBed narrowPeak
  • 41bed broadPeak
  • 33bed bed3+
  • 15bigBed broadPeak
  • 6bed bedMethyl
  • 6bigBed bedMethyl
Organism
  • 36Homo sapiens
Biosample type
  • 22tissue
  • 19primary cell
  • 1in vitro differentiated cells
Organ
  • 17pancreas
  • 6liver
  • 3connective tissue
  • 3epithelium
  • 2adipose tissue
Project
  • 42AMP
Genome assembly (visualization)
  • 42hg19
  • 38GRCh38
Lab
  • 42AMP-T2D consortium
Audit category:
  • 6inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

42 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
pancreas12
liver5
islet of Langerhans11
adipose tissue1
right lobe of liver1
primary cell
skeletal muscle myoblast142
pancreatic acinar cell1
pancreatic alpha cell1
pancreatic beta cell1
in vitro differentiated cells
adipocyte1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego