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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
472
ChIP-seq
9
DNase-seq
1
FAIRE-seq
Assay category
472
DNA binding
10
DNA accessibility
Target of assay
304
transcription factor
165
histone
165
histone modification
103
broad histone mark
81
recombinant protein
62
narrow histone mark
61
RNA binding protein
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
210
June, 2019
97
May, 2019
73
November, 2018
70
October, 2019
64
April, 2019
50
December, 2017
45
October, 2018
42
August, 2017
30
December, 2018
21
January, 2019
14
September, 2018
6
October, 2017
5
September, 2017
2
July, 2019
November, 2020
Available data
599
bam
511
bigWig
483
bed narrowPeak
482
bigBed narrowPeak
412
fastq
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
9
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
3
tar
1
csv
Organism
482
Homo sapiens
Biosample type
305
cell line
167
tissue
10
primary cell
Organ
300
liver
90
brain
43
vasculature
41
blood vessel
15
heart
12
blood
12
bodily fluid
8
epithelium
6
limb
6
musculature of body
4
kidney
4
pancreas
4
spleen
3
artery
1
adipose tissue
1
connective tissue
Project
482
AMP
Genome assembly (visualization)
448
GRCh38
426
hg19
Lab
482
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
month_released!
November, 2020
BIOSAMPLE
ASSAY
482 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
cell line
HepG2
293
GM12878
12
tissue
layer of hippocampus
16
ascending aorta
13
temporal lobe
13
angular gyrus
12
caudate nucleus
12
+ See 18 more…
primary cell
kidney epithelial cell
4
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
See all biosamples
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