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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 747ChIP-seq
  • 209DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 747DNA binding
  • 241DNA accessibility
Target of assay
  • 390histone
  • 390histone modification
  • 354transcription factor
  • 242broad histone mark
  • 148narrow histone mark
  • 83RNA binding protein
  • 81recombinant protein
  • 24chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 210June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 61November, 2018
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 14September, 2018
  • 6January, 2019
  • 6October, 2017
  • 5September, 2017
  • 3December, 2018
  • 2July, 2019
  • 1November, 2020
Available data
  • 3332bam
  • 3114bigWig
  • 1763bed narrowPeak
  • 1601tsv
  • 1298fastq
  • 988bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 274bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 982Homo sapiens
Biosample type
  • 561tissue
  • 301cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 988AMP
Genome assembly (visualization)
  • 944GRCh38
  • 909hg19
Lab
  • 988AMP-T2D consortium
Audit category:
  • 27inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • bodily fluid
BIOSAMPLE
ASSAY

988 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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