Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 707ChIP-seq
  • 177DNase-seq
  • 27ATAC-seq
  • 4FAIRE-seq
Assay category
  • 707DNA binding
  • 208DNA accessibility
Target of assay
  • 402transcription factor
  • 300histone
  • 300histone modification
  • 184broad histone mark
  • 116narrow histone mark
  • 90RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 249November, 2017
  • 180June, 2019
  • 72May, 2019
  • 71November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 5September, 2017
  • 1July, 2019
  • 1November, 2020
Available data
  • 3149bam
  • 2947bigWig
  • 1614bed narrowPeak
  • 1574tsv
  • 1337fastq
  • 915bigBed narrowPeak
  • 280tagAlign
  • 275bed broadPeak
  • 247bigBed broadPeak
  • 238bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4tar
  • 3cool
  • 2hdf5
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 909Homo sapiens
Biosample type
  • 445tissue
  • 355cell line
  • 98primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 915AMP
Genome assembly (visualization)
  • 898hg19
  • 872GRCh38
Lab
  • 915AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 24inconsistent ontology term
Audit category:
  • 12missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • brain
BIOSAMPLE
ASSAY

915 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego