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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 786ChIP-seq
  • 200DNase-seq
  • 23ATAC-seq
  • 5FAIRE-seq
Assay category
  • 786DNA binding
  • 228DNA accessibility
Target of assay
  • 399transcription factor
  • 382histone
  • 382histone modification
  • 238broad histone mark
  • 144narrow histone mark
  • 87RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 195June, 2019
  • 97May, 2019
  • 72November, 2018
  • 67October, 2019
  • 64April, 2019
  • 50December, 2017
  • 40October, 2018
  • 39August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
Available data
  • 2799bam
  • 2599bigWig
  • 1742bed narrowPeak
  • 1257fastq
  • 1123tsv
  • 1014bigBed narrowPeak
  • 376tagAlign
  • 312bed broadPeak
  • 276bigBed broadPeak
  • 247bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 23hic
  • 22bedpe bed3+
  • 8csv
  • 6bed bed3
  • 4hdf5
  • 4tar
  • 3bed bedgraph
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 1008Homo sapiens
Biosample type
  • 551tissue
  • 355cell line
  • 94primary cell
  • 14in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 1014AMP
Genome assembly (visualization)
  • 973GRCh38
  • 936hg19
Lab
  • 1014AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • connective tissue
BIOSAMPLE
ASSAY

1014 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
pancreatic alpha cell6
in vitro differentiated cells
hepatocyte14
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