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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 765ChIP-seq
  • 192DNase-seq
  • 5ATAC-seq
  • 4FAIRE-seq
Assay category
  • 765DNA binding
  • 201DNA accessibility
Target of assay
  • 398transcription factor
  • 362histone
  • 362histone modification
  • 228broad histone mark
  • 134narrow histone mark
  • 86RNA binding protein
  • 81recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 308November, 2017
  • 192June, 2019
  • 93May, 2019
  • 73November, 2018
  • 64April, 2019
  • 56October, 2019
  • 45October, 2018
  • 39August, 2017
  • 36December, 2017
  • 30December, 2018
  • 21January, 2019
  • 6October, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3075bam
  • 2868bigWig
  • 1666bed narrowPeak
  • 1445tsv
  • 1101fastq
  • 966bigBed narrowPeak
  • 391tagAlign
  • 300bed broadPeak
  • 263bigBed broadPeak
  • 253bed bed3+
  • 161txt
  • 73zippedFastqFolder
  • 64xls
  • 30bed bedMethyl
  • 30bigBed bedMethyl
  • 18bedpe bed3+
  • 17hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 960Homo sapiens
Biosample type
  • 561tissue
  • 354cell line
  • 48primary cell
  • 3in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 966AMP
Genome assembly (visualization)
  • 923GRCh38
  • 893hg19
Lab
  • 966AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 19inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • epithelium
BIOSAMPLE
ASSAY

966 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
primary cell
skeletal muscle myoblast142
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
astrocyte of the cerebellum21
in vitro differentiated cells
adipocyte12
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