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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 737ChIP-seq
  • 179DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 737DNA binding
  • 211DNA accessibility
Target of assay
  • 397transcription factor
  • 335histone
  • 335histone modification
  • 208broad histone mark
  • 127narrow histone mark
  • 87RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 177June, 2019
  • 82May, 2019
  • 73November, 2018
  • 70October, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 18April, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3181bam
  • 2945bigWig
  • 1626bed narrowPeak
  • 1433tsv
  • 1358fastq
  • 948bigBed narrowPeak
  • 392tagAlign
  • 292bed broadPeak
  • 255bigBed broadPeak
  • 244bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 28bed bedMethyl
  • 28bigBed bedMethyl
  • 20bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 942Homo sapiens
Biosample type
  • 473tissue
  • 355cell line
  • 103primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 948AMP
Genome assembly (visualization)
  • 904GRCh38
  • 872hg19
Lab
  • 948AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 20inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • heart
BIOSAMPLE
ASSAY

948 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
body of pancreas264
tibial nerve242
brain614
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte12
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