Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 777ChIP-seq
  • 130DNase-seq
  • 27ATAC-seq
  • 4FAIRE-seq
Assay category
  • 777DNA binding
  • 161DNA accessibility
Target of assay
  • 403transcription factor
  • 369histone
  • 369histone modification
  • 230broad histone mark
  • 139narrow histone mark
  • 91RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 130June, 2019
  • 93May, 2019
  • 73November, 2018
  • 69October, 2019
  • 50December, 2017
  • 46April, 2019
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 1July, 2019
  • 1November, 2020
Available data
  • 3248bam
  • 3038bigWig
  • 1634bed narrowPeak
  • 1577tsv
  • 1358fastq
  • 938bigBed narrowPeak
  • 398tagAlign
  • 244bed broadPeak
  • 207bigBed broadPeak
  • 196bed bed3+
  • 153zippedFastqFolder
  • 99txt
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 23bedpe bed3+
  • 22hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 3csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 932Homo sapiens
Biosample type
  • 474tissue
  • 354cell line
  • 93primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 938AMP
Genome assembly (visualization)
  • 895GRCh38
  • 866hg19
Lab
  • 938AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 19inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • kidney
BIOSAMPLE
ASSAY

938 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
heart left ventricle283
body of pancreas264
tibial nerve242
heart718
cell line
HepG2293
GM1287854
Panc161
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego