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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 753ChIP-seq
  • 173DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 753DNA binding
  • 205DNA accessibility
Target of assay
  • 405transcription factor
  • 343histone
  • 343histone modification
  • 208broad histone mark
  • 135narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 178June, 2019
  • 91May, 2019
  • 73November, 2018
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 24October, 2019
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3278bam
  • 3078bigWig
  • 1725bed narrowPeak
  • 1593tsv
  • 1358fastq
  • 958bigBed narrowPeak
  • 398tagAlign
  • 286bed broadPeak
  • 249bigBed broadPeak
  • 237bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 952Homo sapiens
Biosample type
  • 477tissue
  • 355cell line
  • 109primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 958AMP
Genome assembly (visualization)
  • 915GRCh38
  • 879hg19
Lab
  • 958AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 23inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • limb
BIOSAMPLE
ASSAY

958 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
heart718
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
in vitro differentiated cells
hepatocyte14
adipocyte12
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