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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 449ChIP-seq
  • 204DNase-seq
  • 26ATAC-seq
  • 5FAIRE-seq
Assay category
  • 449DNA binding
  • 235DNA accessibility
Target of assay
  • 356histone
  • 356histone modification
  • 221broad histone mark
  • 135narrow histone mark
  • 91transcription factor
  • 38RNA binding protein
  • 11chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 208June, 2019
  • 97May, 2019
  • 70October, 2019
  • 64April, 2019
  • 63November, 2017
  • 45October, 2018
  • 36August, 2017
  • 30December, 2018
  • 22November, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 2711bam
  • 2547bigWig
  • 1427tsv
  • 1376bed narrowPeak
  • 893fastq
  • 684bigBed narrowPeak
  • 312tagAlign
  • 261bed bed3+
  • 259bed broadPeak
  • 222bigBed broadPeak
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 33bed bedMethyl
  • 33bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 7bed bedgraph
  • 7csv
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
  • 1tbi
Organism
  • 678Homo sapiens
Biosample type
  • 512tissue
  • 107primary cell
  • 62cell line
  • 3in vitro differentiated cells
Organ
  • liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 684AMP
Genome assembly (visualization)
  • 672GRCh38
  • 609hg19
Lab
  • 684AMP-T2D consortium
Audit category:
  • 24inconsistent ontology term
  • 1inconsistent control
Audit category:
  • 3missing controlled_by
Audit category:
  • 6inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
organ_slims!
  • liver
BIOSAMPLE
ASSAY

684 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
heart718
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
cell line
GM1287854
Panc161
glomerular visceral epithelial cell1
in vitro differentiated cells
adipocyte12
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