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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 787ChIP-seq
  • 176DNase-seq
  • 27ATAC-seq
  • 5FAIRE-seq
Assay category
  • 787DNA binding
  • 208DNA accessibility
Target of assay
  • 405transcription factor
  • 377histone
  • 377histone modification
  • 234broad histone mark
  • 143narrow histone mark
  • 93RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 312November, 2017
  • 169June, 2019
  • 91May, 2019
  • 73November, 2018
  • 70October, 2019
  • 64April, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3335bam
  • 3101bigWig
  • 1757bed narrowPeak
  • 1591tsv
  • 1356fastq
  • 995bigBed narrowPeak
  • 383tagAlign
  • 276bed broadPeak
  • 252bigBed broadPeak
  • 239bed bed3+
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 32bed bedMethyl
  • 32bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 989Homo sapiens
Biosample type
  • 523tissue
  • 355cell line
  • 100primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • 83vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 995AMP
Genome assembly (visualization)
  • 952GRCh38
  • 916hg19
Lab
  • 995AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 16inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • musculature of body
BIOSAMPLE
ASSAY

995 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
endothelial cell of umbilical vein1021
pancreatic beta cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte12
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