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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 730ChIP-seq
  • 198DNase-seq
  • 27ATAC-seq
  • 4FAIRE-seq
Assay category
  • 730DNA binding
  • 229DNA accessibility
Target of assay
  • 400transcription factor
  • 325histone
  • 325histone modification
  • 201broad histone mark
  • 124narrow histone mark
  • 88RNA binding protein
  • 81recombinant protein
  • 34chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 308November, 2017
  • 203June, 2019
  • 73November, 2018
  • 64April, 2019
  • 58May, 2019
  • 50December, 2017
  • 45October, 2018
  • 42August, 2017
  • 37October, 2019
  • 30December, 2018
  • 21January, 2019
  • 14September, 2018
  • 6October, 2017
  • 5September, 2017
  • 2July, 2019
  • 1November, 2020
Available data
  • 3207bam
  • 3014bigWig
  • 1684bed narrowPeak
  • 1533tsv
  • 1352fastq
  • 959bigBed narrowPeak
  • 392tagAlign
  • 305bed broadPeak
  • 268bigBed broadPeak
  • 261bed bed3+
  • 161txt
  • 153zippedFastqFolder
  • 64xls
  • 34bed bedMethyl
  • 34bigBed bedMethyl
  • 21bedpe bed3+
  • 20hic
  • 12bed bed3
  • 8csv
  • 7bed bedgraph
  • 3cool
  • 3hdf5
  • 3tar
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 953Homo sapiens
Biosample type
  • 499tissue
  • 355cell line
  • 88primary cell
  • 17in vitro differentiated cells
Organ
  • 358liver
  • 127brain
  • 104kidney
  • 94heart
  • 91pancreas
  • 84limb
  • vasculature
  • 79blood vessel
  • 76epithelium
  • 54blood
  • 54bodily fluid
  • 47musculature of body
  • 28connective tissue
  • 26nerve
  • 25artery
  • 18ureter
  • 13spleen
  • 13vein
  • 10adipose tissue
  • 6eye
Project
  • 959AMP
Genome assembly (visualization)
  • 916GRCh38
  • 881hg19
Lab
  • 959AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 23inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 31inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
organ_slims!
  • vasculature
BIOSAMPLE
ASSAY

959 results

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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
primary cell
skeletal muscle myoblast142
pancreatic beta cell7
skeletal muscle satellite cell7
cardiac fibroblast33
mesenchymal stem cell6
in vitro differentiated cells
hepatocyte14
adipocyte12
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